PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G217200.1
Common NameB456_006G217200, LOC105800316
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 296aa    MW: 33221.2 Da    PI: 8.8096
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G217200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.5e-14100151155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ +  Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Gorai.006G217200.1 100 QRMTHIAVERNRRKQMNEHLTVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 151
                         79****************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.31E-1398155No hitNo description
SuperFamilySSF474599.03E-1798172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.14299150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-11100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-14100168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-10105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MALETLSSNE LLNFIIYDTI FATPCSSHHH ESLVTDFSME NSFSSLEQAS NSGNALSCLP  60
MVTPKCRSKG MERSNLAVQG RKKRRRKPRV CKNKAEAETQ RMTHIAVERN RRKQMNEHLT  120
VLRSLMPESY VQRGDQASIV GGAIEFVKEL EHLLQTLEAQ KLRVETNMSL LSSSSSPPFA  180
QFFTHPQYTW SQIPNKHTPK TKASIAEIEV TLIQTHANLR ILTRKVHKQL PKLVAALHSL  240
YLSILHLNVT SMDTLVLYSI SVKVEEGCQL NSVDDIAGAV HNMLRIIEEE ATTLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086RKKRRRK
28087RKKRRRKP
38186KKRRRK
4100111RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486809.10.0PREDICTED: transcription factor bHLH71-like
SwissprotQ9C7T41e-73BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D2S0G40.0A0A0D2S0G4_G
STRINGVIT_02s0012g01450.t011e-123(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2441734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-70bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]